Structure of PDB 5xxm Chain B

Receptor sequence
>5xxmB (length=744) Species: 226186 (Bacteroides thetaiotaomicron VPI-5482) [Search protein sequence]
DMDRFIDALMKKMTVEEKIGQLNLPVTGEITTGQAKSSDIAAKIKRGEVG
GLFNLKGVEKIRDVQKQAVEQSRLGIPLLFGMDVIHGYETMFPIPLGLSC
TWDMTAIEESARIAAIEASADGISWTFSPMVDISRDPRWGRVSEGSGEDP
FLGAMIAEAMVLGYQGKDMQRNDEIMACVKHFALYGAGEGGRDYNTVDMS
RQRMFNEYMLPYEAAVEAGVGSVMASFNEVDGVPATANKWLMTDVLRGQW
GFNGFVVTDYTGISEMIDHGIGDLQTVSARAINAGVDMDMVSEGFVSTLK
KSIQEGKVSMETLNTACRRILEAKYKLGLFDNPYKYCDLKRPARDIFTKA
HRDAARRIAAESFVLLKNDNVTLRPGTPAEPLLPFNPKGNIAVIGPLADS
RTNMPGTWSVAAVLDRCPSLVEGLKEMTAGKANILYAKGSNLISDASYEE
RATMFGRSLNRDNRTDEQLLNEALTVANQSDIIIAALGESSEMSGESSSR
TDLNIPDVQQNLLKELLKTGKPVVLVLFTGRPLTLTWEQEHVPAILNVWF
GGSEAAYAIGDALFGYVNPGGKLTMSFPKNVGQIPLYYAHKNTGRPLAQG
KWFEKFRSNYLDVDNEPLYPFGYGLSYTTFSYGDIDLSRSTIDMTGELTA
AVMVTNTGTWPGSEVVQLYIRDLVGSTTRPVKELKGFQKIFLEPGQSEIV
RFKIAPEMLRYYNYDLQLVAEPGEFEVMIGTNSRDVKSARFTLK
3D structure
PDB5xxm Function and structure relationships of a beta-1,2-glucooligosaccharide-degrading beta-glucosidase.
ChainB
Resolution1.7 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.2.1.21: beta-glucosidase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 MG B D699 V701 D672 V674
BS02 LGC B T59 D110 R168 K207 H208 M251 F254 D286 Y287 E523 T32 D83 R141 K180 H181 M224 F227 D259 Y260 E496
Gene Ontology
Molecular Function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0008422 beta-glucosidase activity
GO:0016798 hydrolase activity, acting on glycosyl bonds
GO:0046872 metal ion binding
Biological Process
GO:0005975 carbohydrate metabolic process
GO:0009251 glucan catabolic process

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Molecular Function
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Biological Process
External links
PDB RCSB:5xxm, PDBe:5xxm, PDBj:5xxm
PDBsum5xxm
PubMed29131329
UniProtQ8A1U1

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