Structure of PDB 5xnl Chain B

Receptor sequence
>5xnlB (length=503) Species: 3888 (Pisum sativum) [Search protein sequence]
GLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPV
LDPMWRQGMFVIPFMTRLGITNSWGGWNITGGTITNPGIWSYEGVAAAHI
VFSGLCFLAAIWHWLYWDLEIFCDERTGKPSLDLPKIFGIHLFLAGVACF
GFGAFHVTGLFGPGIWVSDPYGLTGRVQSVNPAWGVDGFDPFVPGGIASH
HIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAFV
VAGTMWYGSATTPIELFGPTRYQWDQGYFQQEIYRRVSAGHVENQSLSEA
WSKIPEKLAFYDYIGNNPAKGGLFRAGSMDNGDGIAVGWLGHPIFRDKEG
RELFVRRMPTFFETFPVVLVDGDGIVRGDVPFRRAESKYSVEQVGVIVEF
YGGELNGVTYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRGWF
TFGHASFALLFFFGHIWHGARTLFRDLFAGIDPDLDAQVEFGAFQKLGDP
TTR
3D structure
PDB5xnl Structure and assembly mechanism of plant C2S2M2-type PSII-LHCII supercomplex
ChainB
Resolution2.7 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CLA B W185 G186 F190 W184 G185 F189
BS02 CLA B W185 G189 F190 G197 S200 H201 A204 A205 L208 F247 F250 V251 W184 G188 F189 G196 S199 H200 A203 A204 L207 F246 F249 V250
BS03 CLA B R68 L69 A149 C150 F153 H201 H202 F247 A248 V251 V252 T262 R67 L68 A148 C149 F152 H200 H201 F246 A247 V250 V251 T261
BS04 CLA B W33 F61 F65 R68 L145 V148 A248 A249 V252 F451 H455 F458 F462 W32 F60 F64 R67 L144 V147 A247 A248 V251 F450 H454 F457 F461
BS05 CLA B T27 V30 W33 A34 V62 F65 M66 L69 H100 F103 T26 V29 W32 A33 V61 F64 M65 L68 H99 F102
BS06 CLA B L69 I71 W91 H100 L106 G152 F153 H157 F162 G163 P164 L68 I70 W90 H99 L105 G151 F152 H156 F161 G162 P163
BS07 CLA B W33 M37 Y40 G59 F61 F325 A327 G328 W450 F451 W32 M36 Y39 G58 F60 F324 A326 G327 W449 F450
BS08 CLA B T236 S239 A243 F247 F463 H466 I467 G470 L474 T235 S238 A242 F246 F462 H465 I466 G469 L473
BS09 CLA B F139 L208 A212 F215 H216 P221 P222 L229 F138 L207 A211 F214 H215 P220 P221 L228
BS10 CLA B L135 I138 F139 H142 L143 M231 V237 S240 S241 A244 L134 I137 F138 H141 L142 M230 V236 S239 S240 A243
BS11 CLA B W5 Y6 R7 V8 H9 T10 L238 I242 L461 F462 G465 W468 H469 R472 W4 Y5 R6 V7 H8 T9 L237 I241 L460 F461 G464 W467 H468 R471
BS12 CLA B H9 L13 L19 V22 H23 H26 I234 V237 L238 S241 I242 H8 L12 L18 V21 H22 H25 I233 V236 L237 S240 I241
BS13 CLA B H9 H26 V30 W33 F462 H8 H25 V29 W32 F461
BS14 CLA B V8 H9 M25 L29 W115 V7 H8 M24 L28 W114
BS15 CLA B L20 H23 I24 F103 F123 I138 I141 H142 L145 L19 H22 I23 F102 F122 I137 I140 H141 L144
BS16 CLA B L20 I24 A110 W113 H114 L19 I23 A109 W112 H113
BS17 CLA B L211 L214 S218 L210 L213 S217
Gene Ontology
Molecular Function
GO:0016168 chlorophyll binding
GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
Biological Process
GO:0009767 photosynthetic electron transport chain
GO:0009772 photosynthetic electron transport in photosystem II
GO:0015979 photosynthesis
GO:0019684 photosynthesis, light reaction
Cellular Component
GO:0009507 chloroplast
GO:0009521 photosystem
GO:0009523 photosystem II
GO:0009535 chloroplast thylakoid membrane
GO:0009579 thylakoid
GO:0016020 membrane

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5xnl, PDBe:5xnl, PDBj:5xnl
PDBsum5xnl
PubMed28839073
UniProtQ9XQR6

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