Structure of PDB 5x7m Chain B

Receptor sequence
>5x7mB (length=443) Species: 196627 (Corynebacterium glutamicum ATCC 13032) [Search protein sequence]
TVENFNELPAHVWPRNAVRQEDGVVTVAGVPLPDLAEEYGTPLFVVDEDD
FRSRCRDMATAFGGPGNVHYASKAFLTKTIARWVDEEGLALDIASINELG
IALAAGFPASRITAHGNNKGVEFLRALVQNGVGHVVLDSAQELELLDYVA
AGEGKIQDVLIRVKPGIEAHTHEFIATSHEDQKFGFSLASGSAFEAAKAA
NNAENLNLVGLHCHVGSQVFDAEGFKLAAERVLGLYSQIHSELGVALPEL
DLGGGYGIAYTAAEEPLNVAEVASDLLTAVGKMAAELGIDAPTVLVEPGR
AIAGPSTVTIYEVGTTKDVHVDDDKTRRYIAVDGGMSDNIRPALYGSEYD
ARVVSRFAEGDPVSTRIVGSHCESGDILINDEIYPSDITSGDFLALAATG
AYCYAMSSRYNAFTRPAVVSVRAGSSRLMLRRETLDDILSLEA
3D structure
PDB5x7m Structural basis for substrate specificity of meso-diaminopimelic acid decarboxylase from Corynebacterium glutamicum.
ChainB
Resolution2.4 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 4.1.1.20: diaminopimelate decarboxylase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 PLP B K75 H117 H216 G256 G257 E299 G301 R302 Y404 K73 H115 H214 G254 G255 E297 G299 R300 Y402
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0008836 diaminopimelate decarboxylase activity
GO:0016830 carbon-carbon lyase activity
GO:0016831 carboxy-lyase activity
GO:0030170 pyridoxal phosphate binding
Biological Process
GO:0009085 lysine biosynthetic process
GO:0009089 lysine biosynthetic process via diaminopimelate

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Molecular Function
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Biological Process
External links
PDB RCSB:5x7m, PDBe:5x7m, PDBj:5x7m
PDBsum5x7m
PubMed29233695
UniProtP09890|DCDA_CORGL Diaminopimelate decarboxylase (Gene Name=lysA)

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