Structure of PDB 5ws2 Chain B

Receptor sequence
>5ws2B (length=463) Species: 1094980 (Methanolobus psychrophilus R15) [Search protein sequence]
HHHSSGLVPRGSHMASTEIGIIAVGGYNEMGRNMTAIRVNEDIIIIDMGI
RLDRVQIHEDVDTDRMHSLELIEMGAIPDDTIMNEVNGNVRAIVCTHGHL
DHIGAIPKLAHRYAAPIIATPYTTALIKHQIDSERKFGVKNNIVALKAGE
TLEITKDITIEFINTQHSIIDTVFVAIHTPSGAVVYACDFKFDRTPTLGE
VPDFDRLKELGKEGVIALITESTNAGRNGKTPSELIAHMMLKDVLLGTEE
SAVGMIVTTFAAHIARVNSIVQFAQEMGRIPVLLGRSMERYVGTAYQLGY
IDLPENVEIYGSRRDIDNALKKIMEAGKDKYLPVMTGHQGEPGAVLGRIA
NGETPFKVETGDRIIFSANVIPNPMTQANRYALETKLKMKGARIYDNVHV
SGHAYREDHWELLRMLKPEHVIPAHGTIQMHSEYIQMAEDAGYSLGDTLH
LLRNGEELYIEED
3D structure
PDB5ws2 New molecular insights into an archaeal RNase J reveal a conserved processive exoribonucleolysis mechanism of the RNase J family
ChainB
Resolution2.398 Å
3D
structure
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Interaction with ligand
Site
#
Ligand Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01 rna B L37 H84 L85 F245 A246 R271 S272 T321 E326 G328 A329 N354 I356 P357 S386 G387 H388 M415 L52 H99 L100 F260 A261 R286 S287 T336 E341 G343 A344 N369 I371 P372 S401 G402 H403 M430
BS02 ZN B D86 H87 D174 H410 D101 H102 D189 H425
BS03 ZN B H82 H84 H152 D174 H97 H99 H167 D189
Gene Ontology
--> -->
 
 
UnboundLocalError
Python 3.6.8: /usr/bin/python3
Sat Nov 30 18:30:40 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)
   1444         else:
=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)
   1446     
   1447     uniprot_line=''
pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '5ws2', asym_id = 'B', title = 'New molecular insights into an archaeal RNase J ...xoribonucleolysis mechanism of the RNase J family'
 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='5ws2', asym_id='B', title='New molecular insights into an archaeal RNase J ...xoribonucleolysis mechanism of the RNase J family')
    839 
    840     if go:
=>  841         display_go(go,uniprot,pdbid,asym_id)
    842     return pubmed,uniprot
    843 
global display_go = <function display_go>, go = '0003723,0004534,0046872', uniprot = '', pdbid = '5ws2', asym_id = 'B'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003723,0004534,0046872', uniprot='', pdbid='5ws2', asym_id='B')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>