Structure of PDB 5why Chain B

Receptor sequence

>5whyB (length=421) Species: 203119 (Acetivibrio thermocellus ATCC 27405) [Search protein sequence]

MAMIHKFSMMGTNIVVDVNSGAVHVVDDISFDILDYYKNFTAGEIKNKLA
HKYNADEIDEALREIESLEAEGLLFSEDPKSVVKALCLHISHDCNLRCKY
CFASRNMMSLEVGKKAIDFLISESGNRKNLEIDFFGGEPMMNFDVVKGII
EYARQKEKEHNKNFRFTLTTNGLLLNDENIKYINENMQNIVLSIDGRKEV
NDRMRIRIDGSGCYDDILPKFKYVAESRNQDNYYVRGTFTRENMDFSNDV
LHLADEGFRQISVEPVVAAKDSGYDLREEDLPRLFEEYEKLAYEYVKRRK
EGNWFNFFHFMIDLTGCGSGHEYLAVTPEGDIYPCHQFVGNEKFKMGNVK
EGVLNRDIQNYFKNSNVYTKKECDSCWAKFYCSGGCAANSYNFHKDINTV
YKVGCELEKKRVECALWIKAQ

3D structure

PDB

5why Structural Insights into Thioether Bond Formation in the Biosynthesis of Sactipeptides.

Chain

Resolution

2.692 Å

3D
structure

[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]

Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	SF4	B	C344 S346 C362 C413 A414 A415	C317 S319 C335 C386 A387 A388
BS02	SF4	B	C104 L106 C108 C111 G154 R222	C94 L96 C98 C101 G137 R205
BS03	SF4	B	C400 C403 C409 V427 C432	C373 C376 C382 V400 C405
BS04	SAM	B	Y110 F152 G154 E155 T186 T187 N188 S210 R222 R253 T255 V283 V284	Y100 F135 G137 E138 T169 T170 N171 S193 R205 R236 T238 V266 V267
BS05	CA	B	G11 D28	G11 D28

Gene Ontology

	Molecular Function
GO:0003824	catalytic activity
GO:0016491	oxidoreductase activity
GO:0046872	metal ion binding
GO:0051536	iron-sulfur cluster binding
GO:0051539	4 iron, 4 sulfur cluster binding

View graph for
Molecular Function

External links

PDB	RCSB:5why, PDBe:5why, PDBj:5why
PDBsum	5why
PubMed	28704043
UniProt	A3DDW1

[Back to BioLiP]