Structure of PDB 5w9q Chain B

Receptor sequence
>5w9qB (length=54) Species: 9606 (Homo sapiens) [Search protein sequence]
QNRKCGCAACLRRMDCGRCDFCCDKPKFGGSNQKRQKCRWRQCLQFAMKR
LLPS
3D structure
PDB5w9q DNA Sequence Recognition of Human CXXC Domains and Their Structural Determinants.
ChainB
Resolution1.8 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna B Q334 R336 K359 R369 Q370 K371 R384 Q1 R3 K25 R35 Q36 K37 R50 PDBbind-CN: Kd=0.6uM
BS02 dna B R369 R384 R35 R50 PDBbind-CN: Kd=0.6uM
BS03 ZN B C350 C353 C356 C372 C16 C19 C22 C38
BS04 ZN B C338 C341 C344 C377 C5 C7 C10 C43
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0008270 zinc ion binding

View graph for
Molecular Function
External links
PDB RCSB:5w9q, PDBe:5w9q, PDBj:5w9q
PDBsum5w9q
PubMed29276034
UniProtQ9UIS9|MBD1_HUMAN Methyl-CpG-binding domain protein 1 (Gene Name=MBD1)

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