Structure of PDB 5vn5 Chain B

Receptor sequence
>5vn5B (length=332) Species: 627192 (Sphingobium sp. SYK-6) [Search protein sequence]
MIIDCHGHVSAPVELWAYKASLLAHRGSHGRGGVKVTDEQIIAAAHHKET
WPDGHIELLHNHGTDMQLISPRPFQMMNSAKPARVVHWFCEEVNTLIHRQ
CTLIPEMFIPVAGLPQVAGEPIENVFAEMDRCVSMGFKGFLLNPDPYENG
AEEAPPLGDRYWYPLYEKLCELDLPAHIHATGSQSERSPYSLHFINEETI
ATYNLCTSSVFDDFPQLKVVVSHGGGAIPYQLGRFESQSRRSKHLFSERM
AKLYFDTVLYTEGALRLLIETVGPERCLFGSECPGVGSTIDPATGKQMDH
IAPFIQKFDFLSDADKKLIFEDNARKVFNLEV
3D structure
PDB5vn5 The bacterialmeta-cleavage hydrolase LigY belongs to the amidohydrolase superfamily, not to the alpha / beta-hydrolase superfamily.
ChainB
Resolution1.9 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ZN B H6 H8 H179 E282 H6 H8 H179 E282
Gene Ontology
Molecular Function
GO:0016787 hydrolase activity
GO:0016829 lyase activity
GO:0016831 carboxy-lyase activity
GO:0046872 metal ion binding
Biological Process
GO:0019748 secondary metabolic process
Cellular Component
GO:0005737 cytoplasm

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5vn5, PDBe:5vn5, PDBj:5vn5
PDBsum5vn5
PubMed28935670
UniProtG2IN02

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