Structure of PDB 5vm8 Chain B

Receptor sequence
>5vm8B (length=237) Species: 485 (Neisseria gonorrhoeae) [Search protein sequence]
HMPRFYLPENLSVGQTVDLPDNIVRHLNVLRVRPNENITLFDGKGKAHTA
RLTVLEKHRAEAEILHEDTTDNESPLNITLIQSISSGDRMDFTLQKSVEL
GVTAIQPVISERCIVRAAKRLARWQEIVISACEQSGRNTVPPVLPIIGYR
EALDKMPSENTKLIMSINRACKLGDIRHPSGAIVFMVGPEGGWTEQEEQQ
AFEAGFQAVTLGKRILRTETAPLAAIAAMQTLWGDFT
3D structure
PDB5vm8 Crystal structure of a Ribosomal RNA small subunit methyltransferase E from Neisseria gonorrhoeae bound to S-adenosyl methionine
ChainB
Resolution2.4 Å
3D
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Enzymatic activity
Enzyme Commision number 2.1.1.193: 16S rRNA (uracil(1498)-N(3))-methyltransferase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 SAM B M169 G192 E194 G196 W197 L215 L220 M165 G188 E190 G192 W193 L211 L216
Gene Ontology
Molecular Function
GO:0008168 methyltransferase activity
GO:0070042 rRNA (uridine-N3-)-methyltransferase activity
Biological Process
GO:0006364 rRNA processing
GO:0032259 methylation
GO:0070475 rRNA base methylation
Cellular Component
GO:0005737 cytoplasm

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5vm8, PDBe:5vm8, PDBj:5vm8
PDBsum5vm8
PubMed
UniProtQ5F4Y3

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