Structure of PDB 5vhv Chain B

Receptor sequence

>5vhvB (length=361) Species: 294 (Pseudomonas fluorescens) [Search protein sequence]

AAPALKEIFNVERLQHIASEMTAVYPAFDAKGFLKHAKAGLAELSVMQRM
ARVSESLHAVIPLDYPQTLTLLYALAPRLNSGFVSLFLPHYVASYGRDDF
KRSMAALKYFTTFGSAEFAIRHFLLHDFQRTLAVMQAWSQDDNEHVRRLA
SEGSRPRLPWSFRLAEVQADPELCASILDHLKADSSLYVRKSVANHLNDI
TKDHPEWVLSLIEGWNLENPHTAWIARHALRSLIKQGNTRALTLMGAGAK
AEVKIHHLMVTPAVINLGERINLSFTLESTAPAPQKLVVDYAIDYVKSTG
HGAAKVFKLKAFSLGAGAQQHIRREQHIRDMTTRKHYPGRHVVHVLVNGE
RLGSAEFELRA

3D structure

PDB

5vhv Selective base excision repair of DNA damage by the non-base-flipping DNA glycosylase AlkC.

Chain

Resolution

1.799 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	dna	B	R152 R159 N199 K206 R235 K301 S302 K309 T337 Y341	R148 R155 N195 K202 R231 K297 S298 K305 T333 Y337
BS02	dna	B	A8 L9 K10 S49 V50 M51 W164 S165 R167 F311 M335 T336 T337 R338	A4 L5 K6 S45 V46 M47 W160 S161 R163 F307 M331 T332 T333 R334

External links

PDB	RCSB:5vhv, PDBe:5vhv, PDBj:5vhv
PDBsum	5vhv
PubMed	29054852
UniProt	C3K795

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