Structure of PDB 5vg3 Chain B

Receptor sequence
>5vg3B (length=376) Species: 1423 (Bacillus subtilis) [Search protein sequence]
DIPQPIRGDKGATVKIPRNIERDRQNPDMLVPPETDHGTVSNMKFSFSDT
HNRLEKGGYAREVTVRELPISENLASVNMRLKPGAIRELHWHKEAEWAYM
IYGSARVTIVDEKGRSFIDDVGEGDLWYFPSGLPHSIQALEEGAEFLLVF
DDGSFSENSTFQLTDWLAHTPKEVIAANFGVTKEEISNLPGKEKYIFENQ
LPGSLKDDIVEGPNGEVPYPFTYRLLEQEPIESEGGKVYIADSTNFKVSK
TIASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNY
QAGDVGYVPFAMGHYVENIGDEPLVFLEIFKDDHYADVSLNQWLAMLPET
FVQAHLDLGKDFTDVLSKEKHPVVKK
3D structure
PDB5vg3 Structure of Oxalate Decarboxylase from Bacillus subtilis at pH 4.6
ChainB
Resolution1.451 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) R92 H95 H97 E101 H140 E162
Catalytic site (residue number reindexed from 1) R87 H90 H92 E96 H135 E157
Enzyme Commision number 4.1.1.2: oxalate decarboxylase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 MN B H273 H275 E280 H319 H268 H270 E275 H314
BS02 MN B H95 H97 E101 H140 H90 H92 E96 H135
Gene Ontology
Molecular Function
GO:0016831 carboxy-lyase activity
GO:0046564 oxalate decarboxylase activity
GO:0046872 metal ion binding
Biological Process
GO:0033609 oxalate metabolic process
Cellular Component
GO:0005737 cytoplasm

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Molecular Function
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Cellular Component
External links
PDB RCSB:5vg3, PDBe:5vg3, PDBj:5vg3
PDBsum5vg3
PubMed
UniProtO34714|OXDC_BACSU Oxalate decarboxylase OxdC (Gene Name=oxdC)

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