Structure of PDB 5vf4 Chain B

Receptor sequence

>5vf4B (length=381) Species: 498848 (Thermus aquaticus Y51MC23) [Search protein sequence]

MIFSVKDSLRQAVEAASGGLCTVMYTKKGQPVFLRRIPRFNLEDIDPSLG
TGPHPAFVVGGEVKSEIWIGQFPGIVSNGELISVPGVDPANTINFDEALG
YARASGPGFHLMTNAEWAAVALLTWKSRGAGDDPVRGNTQWGRSHEAQWE
AGTRQSGDAPGEDTGAQGRSGRTLTGSGPATWRHDGTPAGIADLVGNVWE
WVAGLRLVGGEIQIIPDNDAAFASTDMSASSPLWKAIRASDGALVSPGTS
GTLKYDINPNKSYSNDNTIQDLGPLTLHTTTQTPPAGWDSNTYQDYASAL
YKDLVVGTGITVPNLLKVLMLAPHTTSITKGRLYARPYGERLPIRGGDWG
NGGVAGLAALYLLNPRGSRRWGVGARPAFVL

3D structure

PDB

5vf4 Crystal structure of a Thermus aquaticus diversity-generating retroelement variable protein.

Chain

Resolution

2.81 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	CA	B	D193 L194 G196 V198 E200	D193 L194 G196 V198 E200
BS02	CA	B	S264 D266 T268 Q270 D295	S264 D266 T268 Q270 D295

External links

PDB	RCSB:5vf4, PDBe:5vf4, PDBj:5vf4
PDBsum	5vf4
PubMed	30629599

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