Structure of PDB 5v1s Chain B

Receptor sequence
>5v1sB (length=427) Species: 1307 (Streptococcus suis) [Search protein sequence]
MRTISEDILFRLEKFGGILINKTNFERIELDETEAFFLYLVQNHGIEIAT
SFFKKEIEMGKLERALSLNIYSDNNIEDSLNNPYETLQNARKHVAKLKKH
NILSFPLELVIYPSMYCDLKCGFCFLNAKPAKDWERILRQAKDNGVLSVS
ILGGEPTRYFDIDNLLIACEELKIKTTITTNAQLIKKSTVEILAKSKYIT
PVLSLQTLDSKLNFELMGVRPDRQIKLAKYFNEVGKKCRINAVYTKQSYE
QIIELVDFCIENKIDRFSVANYSEIKKKYDLADLRRLNEYVTDYITQREA
NLNFATEGCHLFTAYPELINNSIEFSEFDEMYYGCRAKYTKMEIMSNGDI
LPCIAFLGVNQTKQNAFEKDLLDVWYDDPLYGGIRSFRTKNSKCLSCGLL
KICEGGCYVNLIKEKSPEYFRDSVCQL
3D structure
PDB5v1s Structures of the peptide-modifying radical SAM enzyme SuiB elucidate the basis of substrate recognition.
ChainB
Resolution2.492 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 SF4 B C117 K120 C121 C124 C117 K120 C121 C124
BS02 SF4 B C406 C409 C415 G417 R433 C437 C394 C397 C403 G405 R421 C425
BS03 SF4 B C321 C347 C365 C419 C309 C335 C353 C407
BS04 SAM B F123 F125 G159 G160 E161 T185 S210 Y278 S279 F123 F125 G153 G154 E155 T179 S204 Y272 S273
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0046872 metal ion binding
GO:0051536 iron-sulfur cluster binding
GO:0051539 4 iron, 4 sulfur cluster binding

View graph for
Molecular Function
External links
PDB RCSB:5v1s, PDBe:5v1s, PDBj:5v1s
PDBsum5v1s
PubMed28893989
UniProtA0A0Z8EWX1

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