Structure of PDB 5utm Chain B

Receptor sequence
>5utmB (length=333) Species: 1311 (Streptococcus agalactiae) [Search protein sequence]
VVKVGINGFGRIGRLAFRRIQNVEGVEVTRINDLTDPNMLAHLLKYDTTQ
GRFDGTVEVKEGGFEVNGQFVKVSAEREPANIDWATDGVEIVLEATGFFA
SKEKAEQHIHENGAKKVVITAPGGNDVKTVVFNTNHDILDGTETVISGAS
CTTNCLAPMAKALQDNFGVKQGLMTTIHAYTGDQMILDGPHRGGDLRRAR
AGAANIVPNSTGAAKAIGLVIPELNGKLDGAAQRVPVPTGSVTELVATLE
KDVTVEEVNAAMKAAANDSYGYTEDPIVSSDIVGISYGSLFDATQTKVQT
VDGNTLVKVVSWYDNEMSYTSQLVRTLEYFAKI
3D structure
PDB5utm Mutant Structures of Streptococcus agalactiae GAPDH
ChainB
Resolution1.77 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 1.2.1.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 NAD B G11 R12 I13 D34 L35 T97 G98 F99 F100 T121 C152 N316 Y320 G10 R11 I12 D33 L34 T96 G97 F98 F99 T120 C151 N315 Y319
BS02 MG B I21 V24 V27 I20 V23 V26
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0004365 glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
GO:0016491 oxidoreductase activity
GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
GO:0042802 identical protein binding
GO:0046872 metal ion binding
GO:0050661 NADP binding
GO:0051287 NAD binding
Biological Process
GO:0006006 glucose metabolic process
GO:0006096 glycolytic process
Cellular Component
GO:0005737 cytoplasm

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Molecular Function
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Cellular Component
External links
PDB RCSB:5utm, PDBe:5utm, PDBj:5utm
PDBsum5utm
PubMed
UniProtQ9ALW2

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