Structure of PDB 5udt Chain B

Receptor sequence
>5udtB (length=252) Species: 220668 (Lactiplantibacillus plantarum WCFS1) [Search protein sequence]
ATLATKKATLVAALKDLQRVTVAFSGGIDSTLVLKMALDVLGRDNVTAVV
ANSELFTDEEFDKAMSLAEELGANVQGTTLDYLSDDHIKNNTPDSWYYAK
KMFYSRLNDIAANNGSAAVLDGMIKNPGLKARSEAGARSLLQEADFFKTD
VRALAQELGLTNWNKVASCSVSSRFPYGTTLTHDNIAQVMAAEKYLRSLG
FPTVRVRFHNDIARIELPEARIGDFLVFNDRVNRQLQSLGFRYVTLDLGG
FR
3D structure
PDB5udt Structural insights into the catalytic mechanism of a sacrificial sulfur insertase of the N-type ATP pyrophosphatase family, LarE.
ChainB
Resolution3.188 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 4.4.1.37: pyridinium-3,5-bisthiocarboxylic acid mononucleotide synthase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 AMP B A24 F25 S26 S31 A52 F104 D122 G123 M124 A23 F24 S25 S30 A51 F103 D121 G122 M123
Gene Ontology
Molecular Function
GO:0005524 ATP binding
GO:0016783 sulfurtransferase activity
GO:0016829 lyase activity

View graph for
Molecular Function
External links
PDB RCSB:5udt, PDBe:5udt, PDBj:5udt
PDBsum5udt
PubMed28784764
UniProtF9UST4|LARE_LACPL Pyridinium-3,5-bisthiocarboxylic acid mononucleotide synthase (Gene Name=larE)

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