Structure of PDB 5ud3 Chain B

Receptor sequence
>5ud3B (length=293) Species: 85962 (Helicobacter pylori 26695) [Search protein sequence]
MLVKGNEILLKAHKEGYGVGAFNFVNFEMLNAIFEAGNEENSPLFIQASE
GAIKYMGIDMAVGMVKIMCERYPHIPVALHLDHGTTFESCEKAVKAGFTS
VMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLVLVNPKEAEQFV
KESQVDYLAPAIGTSQGAFKFKGEPKLDFERLQEVKRLTNIPLVLHGASA
IPDNVRKSYLDAGGDLKGSKGVPFEFLQESVKGGINKVNTDTDLRIAFIA
EVRKVANEDKSQFDLRKFFSPAQLALKNVVKERMKLLGSANKI
3D structure
PDB5ud3 Active site remodeling during the catalytic cycle in metal-dependent fructose-1,6-bisphosphate aldolases.
ChainB
Resolution1.44 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 4.1.2.13: fructose-bisphosphate aldolase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ZN B H83 E134 H210 H83 E134 H196
BS02 ZN B H83 D104 E134 H83 D104 E134
BS03 P6F B S49 D82 H83 Q180 G181 K184 G211 S213 N253 D255 T256 R259 S49 D82 H83 Q166 G167 K170 G197 S199 N239 D241 T242 R245
Gene Ontology
Molecular Function
GO:0004332 fructose-bisphosphate aldolase activity
GO:0008270 zinc ion binding
GO:0016829 lyase activity
GO:0016832 aldehyde-lyase activity
GO:0046872 metal ion binding
Biological Process
GO:0005975 carbohydrate metabolic process
GO:0006096 glycolytic process
GO:0030388 fructose 1,6-bisphosphate metabolic process

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Molecular Function
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Biological Process
External links
PDB RCSB:5ud3, PDBe:5ud3, PDBj:5ud3
PDBsum5ud3
PubMed29593097
UniProtP56109|ALF_HELPY Fructose-bisphosphate aldolase (Gene Name=fba)

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