Structure of PDB 5u2i Chain B

Receptor sequence
>5u2iB (length=151) Species: 5763 (Naegleria fowleri) [Search protein sequence]
MSNERTFIALKPDAVQRGLVGTIIARFEQKGFKLVALKLITPSADLAKKH
YAEHDGKPFFNGLVEFLTSGPVAAMVWEGKGVVAAARKMIGATKPLESAP
GTIRGDFAIDVGRNIIHGSDAVETAQREIALWFQDSELNEWTPTQNKWIY
E
3D structure
PDB5u2i Crystal structure of a nucleoside diphosphate kinase from Naegleria fowleri
ChainB
Resolution1.4 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 2.7.4.6: nucleoside-diphosphate kinase.
Interaction with ligand
Site
#
Ligand Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01 MG B K33 E78 K33 E78
Gene Ontology
Molecular Function
GO:0004550 nucleoside diphosphate kinase activity
GO:0005524 ATP binding
GO:0016301 kinase activity
GO:0046872 metal ion binding
Biological Process
GO:0006183 GTP biosynthetic process
GO:0006228 UTP biosynthetic process
GO:0006241 CTP biosynthetic process
GO:0009142 nucleoside triphosphate biosynthetic process
GO:0016310 phosphorylation

View graph for
Molecular Function

View graph for
Biological Process
External links
PDB RCSB:5u2i, PDBe:5u2i, PDBj:5u2i
PDBsum5u2i
PubMed
UniProtA0A1S4NYF9

[Back to BioLiP]