Structure of PDB 5syb Chain B

Receptor sequence
>5sybB (length=90) Species: 9606 (Homo sapiens) [Search protein sequence]
KHHPDLIFCRKQAGVAIGRLCEKCDGKCVICDSYVRPSTLVRICDECNYG
SYQGRCVICGGPGVSDAYYCKECTIQEKDRDGCPKIVNLG
3D structure
PDB5syb Splicing modulators act at the branch point adenosine binding pocket defined by the PHF5A-SF3b complex.
ChainB
Resolution1.82 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ZN B C11 C46 C49 C85 C9 C44 C47 C83
BS02 ZN B C30 C33 C72 C75 C28 C31 C70 C73
BS03 ZN B C23 C26 C58 C61 C21 C24 C56 C59
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003723 RNA binding
GO:0005515 protein binding
GO:0008270 zinc ion binding
GO:0046872 metal ion binding
Biological Process
GO:0000398 mRNA splicing, via spliceosome
GO:0006397 mRNA processing
GO:0008380 RNA splicing
GO:0045893 positive regulation of DNA-templated transcription
GO:0048863 stem cell differentiation
GO:1903241 U2-type prespliceosome assembly
Cellular Component
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005681 spliceosomal complex
GO:0005684 U2-type spliceosomal complex
GO:0005686 U2 snRNP
GO:0005689 U12-type spliceosomal complex
GO:0016363 nuclear matrix
GO:0016607 nuclear speck
GO:0071005 U2-type precatalytic spliceosome
GO:0071011 precatalytic spliceosome

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Cellular Component
External links
PDB RCSB:5syb, PDBe:5syb, PDBj:5syb
PDBsum5syb
PubMed28541300
UniProtQ7RTV0|PHF5A_HUMAN PHD finger-like domain-containing protein 5A (Gene Name=PHF5A)

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