Structure of PDB 5sdc Chain B

Receptor sequence
>5sdcB (length=695) Species: 837 (Porphyromonas gingivalis) [Search protein sequence]
EGMWLMQQLGRKYAQMKERGLKMKEYDLYNPNGTSLKDAVVLFDGGCTGE
VVSDRGLVLTNHHCGYDMIQAHSTLEHNYLENGFWAMREADELPNKDISV
VFIDKIEDVTDYVKKELKAIKDPNSMDYLSPKYLQKLADKKAGKNFSAKN
PGLSVEIKAFYGGNLYLMFTKKTYTDVRLVGAPPSSIGKFGADTDNWIWP
RHTGDFSIFRIYADKNGNPAPYSEDNVPLKPKRFFNISLGGVQENDYAMI
MGFPGTTHRYFTASEVDEWKSIDNDIRIRMRDIRQGVMLREMLADPQIKI
MYSAKYAASQNAYKRAIGANWAIKTRGLRQNKQAMQDRLIAWGAKQGTPR
YEEAVHEIDATVAKRADLRRRYWMIEEGIIRGIEFARSPIPTEDETKALQ
ASARKEAIDKIRTRYSKFANKDYSAEVDKKVAVAMLTEYLKEIPYENLPL
HLRLVKDRFAGDVQAYVDDIFARSVFGSEAQFDAFAAVPSVEKLAEDPMV
LFASSVFDEYRKLYNELRPYDDPILRAQRTYIAGLLEMDGDQDQFPDANL
TLRFTYGQVKGYSPRDNVYYGHQTTLDGVMEKEDPDNWEFVVDPKLKAVY
ERKDFGRYADRSGRMPVAFCATTHTTGGNSGSPVMNANGELIGLNFDRNW
EGVGGDIQYLADYQRSIIVDIRYVLLVIDKVGGCQRLLDEMNIVP
3D structure
PDB5sdc PanDDA analysis group deposition
ChainB
Resolution1.928 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.4.14.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 LDV B C69 H85 N218 F671 D672 C47 H63 N196 F646 D647
Gene Ontology
Molecular Function
GO:0004177 aminopeptidase activity
GO:0008236 serine-type peptidase activity
GO:0008239 dipeptidyl-peptidase activity
GO:0042277 peptide binding
GO:0070009 serine-type aminopeptidase activity
Biological Process
GO:0006508 proteolysis
GO:0043171 peptide catabolic process
GO:0048588 developmental cell growth
Cellular Component
GO:0009986 cell surface

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5sdc, PDBe:5sdc, PDBj:5sdc
PDBsum5sdc
PubMed
UniProtB2RID1|DPP11_PORG3 Asp/Glu-specific dipeptidyl-peptidase (Gene Name=dpp11)

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