Structure of PDB 5obt Chain B

Receptor sequence
>5obtB (length=230) Species: 3702 (Arabidopsis thaliana) [Search protein sequence]
FQSGTRWAVLVAGSSGYWNYRHQADICHAYQLLRKGGLKEENIVVFMYDD
IANNYENPRPGTIINSPHGKDVYQGVPKDYTGDDVNVDNLFAVILGDKTA
VKGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSPYLYANDLNDVLKKK
HALGTYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCP
GEEPSPPPEYETCLGDLYSVAWMEDSGMHN
3D structure
PDB5obt Structural analyses ofArabidopsis thalianalegumain gamma reveal differential recognition and processing of proteolysis and ligation substrates.
ChainB
Resolution1.5 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 3.4.22.34: legumain.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide B F54 W248 F1 W195
BS02 peptide B R74 H75 H177 C219 S247 W248 G249 E255 D269 R21 H22 H124 C166 S194 W195 G196 E202 D216
Gene Ontology
Molecular Function
GO:0008233 peptidase activity
Biological Process
GO:0006508 proteolysis

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:5obt, PDBe:5obt, PDBj:5obt
PDBsum5obt
PubMed29628443
UniProtQ39119|VPEG_ARATH Vacuolar-processing enzyme gamma-isozyme (Gene Name=At4g32940)

[Back to BioLiP]