Structure of PDB 5npi Chain B

Receptor sequence

>5npiB (length=233) Species: 10090 (Mus musculus) [Search protein sequence]

EVQLQQSGPELVKPGASLKISCKTSGYTFTDFTFHWVKLSHGPSLEWIGT
IKPSNGDTAYNQKFKGKATLSVDKSASTAHIEFRSLTSEDSAVYFCARFG
GSYPYAMDYWGQGTSVIVSSGTGASDIVLTQSPATLSVTPGDRVSLSCRA
SQGIYNYVHWFQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSI
NSVESEDFGMYFCQQTNKWPLTFGAGTKLELKA

3D structure

PDB

5npi Conformational Flexibility in the Immunoglobulin-Like Domain of the Hepatitis C Virus Glycoprotein E2.

Chain

Resolution

2.0 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	peptide	B	K52 D57 T58 F99 Y105 Y170 Y172 T231 N232 K233 W234	K52 D57 T58 F99 Y105 Y155 Y157 T216 N217 K218 W219

External links

PDB	RCSB:5npi, PDBe:5npi, PDBj:5npi
PDBsum	5npi
PubMed	28512091

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