Structure of PDB 5nbm Chain B

Receptor sequence
>5nbmB (length=397) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence]
SAVVIDPGSYTTNIGYSGSDFPQSILPSVYGKYTADEGNKKIFSEQSIGI
PRKDYELKPIIENGLVIDWDTAQEQWQWALQNELYLNSNSGIPALLTEPV
WNSTENRKKSLEVLLEGMQFEACYLAPTSTCVSFAAGRPNCLVVDIGHDT
CSVSPIVDGMTLSKSTRRNFIAGKFINHLIKKALEPKEIIPLFAIKQRKP
EFIKKTFDYEVDKSLYDYANNRGFFQECKETLCHICPTKTLEETKTELSS
TAKRSIESPWNEEIVFDNETRYGFAEELFLPKEDDIPANWPRSNSGVVEL
IGLADLVYSSIMSSDVDLRATLAHNVVLTGGTSSIPGLSDRLMTELNKIL
PSLKFRILTTGHTIERQYQSWLGGSILTSLGTFHQLWVGKKEYEEVG
3D structure
PDB5nbm The nuclear actin-containing Arp8 module is a linker DNA sensor driving INO80 chromatin remodeling.
ChainB
Resolution3.4 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ATP B G22 S23 Y24 T25 H162 Q240 K243 G413 G8 S9 Y10 T11 H148 Q226 K229 G331
Gene Ontology
Molecular Function
GO:0003682 chromatin binding
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0042393 histone binding
Biological Process
GO:0006281 DNA repair
GO:0006325 chromatin organization
GO:0006338 chromatin remodeling
GO:0006351 DNA-templated transcription
GO:0006355 regulation of DNA-templated transcription
GO:0006357 regulation of transcription by RNA polymerase II
GO:0051382 kinetochore assembly
Cellular Component
GO:0000785 chromatin
GO:0000812 Swr1 complex
GO:0005634 nucleus
GO:0016514 SWI/SNF complex
GO:0031011 Ino80 complex
GO:0035267 NuA4 histone acetyltransferase complex
GO:0043232 intracellular non-membrane-bounded organelle

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5nbm, PDBe:5nbm, PDBj:5nbm
PDBsum5nbm
PubMed30177756
UniProtP80428|ARP4_YEAST Actin-related protein 4 (Gene Name=ARP4)

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