Structure of PDB 5n98 Chain B

Receptor sequence
>5n98B (length=851) Species: 7227 (Drosophila melanogaster) [Search protein sequence]
LGCNVSAPSGVLERVKELMEDYSRAPDAKFQQQFRHLLSVNFEEFVAETK
ERNADLDWVNPKLDERLQLELGQRQLEENAKKRLEARKKLPTMKYADDII
QAVRENQVILIVGSTGCGKTTQVPQILLDDAISRGCASSCRIICTQPRRI
SAIAIAEWVSYERCESLGNSVGYQIRLESRKARERASITYCTTGVLLQQL
QSDPLMHNLSVLILDEIHERSVETDLLMGLLKVILPHRPDLKVILMSATV
REQDFCDYFNNCPMFRIEGVMFPVKMLYLEDVLSKTNYEFQPPERRMKHE
AMIEPYLRRIRNSYDSRVLDKLRLPESEGCEDIDFIADLVYYICENEPEG
AILVFLPGYDKISQLYNILDKPKTSKGQRWRDHMAVFPLHSLMQSGEQQA
VFRRPPAGQRKVIISTIIAETSVTIDDVVYVINSGRTKATNYDIETNIQS
LDEVWVTKANTQQRRGRAGRVRPGICYNLFSRAREDRMDDIPTPEILRSK
LESIILSLKLLHIDDPYRFLQTLINAPNPEAIKMGVELLKRIEALDQTGT
LTPLGMHLAKLPIDPQMGKMILMSALFCCLDPITSAAAALSFKSPFYSPL
GKESRVDEIKRRMARNMRSDHLMVHNTIIAYRDSRYSHAERDFCYKNFLS
SMTLQQLERMKNQFSELLYNYKFLASSNCKDAASNKNSEKIPLLRAIIGA
GLYPNMAHLRKSRQRAIHTMATDDGRRVNFHPSSVNSGESGFDSAYFVYF
QRQKSTDLFLLDSTMVFPMALIIFGDGVEAGVTQNTPYLCVAKTYYFKCN
RETADVVIQLRSNLEKLLLKKALYPAPIEENGYEKQLIKAIELLLSLDER
L
3D structure
PDB5n98 Molecular Mechanistic Insights into Drosophila DHX36-Mediated G-Quadruplex Unfolding: A Structure-Based Model.
ChainB
Resolution2.756 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.6.4.13: RNA helicase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna B R211 R212 R239 T255 G257 V258 Q261 Q264 S265 G431 Y432 H463 S464 L465 T489 S495 K511 T513 E568 P635 F665 R793 P810 S833 T834 R148 R149 R176 T192 G194 V195 Q198 Q201 S202 G358 Y359 H390 S391 L392 T416 S422 K438 T440 E495 P562 F592 R715 P732 S755 T756
Gene Ontology
Molecular Function
GO:0002151 G-quadruplex RNA binding
GO:0003676 nucleic acid binding
GO:0003678 DNA helicase activity
GO:0003723 RNA binding
GO:0003724 RNA helicase activity
GO:0004386 helicase activity
GO:0005524 ATP binding
GO:0016787 hydrolase activity
GO:0051880 G-quadruplex DNA binding
Biological Process
GO:0032508 DNA duplex unwinding
GO:0044806 G-quadruplex DNA unwinding
Cellular Component
GO:0005634 nucleus
GO:0005737 cytoplasm

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5n98, PDBe:5n98, PDBj:5n98
PDBsum5n98
PubMed29429875
UniProtQ8SWT2

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