Structure of PDB 5mdo Chain B

Receptor sequence
>5mdoB (length=341) Species: 669 (Vibrio harveyi) [Search protein sequence]
EYLTKDSFSYEVYGIIAMQAAYRDYDSGDAKQDDNLGGMQLNNESRIGFR
GKKQFANFEPTFIWQIEGGYVDPSFGGEGAGLGERDTFVGFESASWGQVR
LGRVLTPMYELVDWPASNPGLGDVYDWGGAIGGAKYQDRQSNTIRWDSPM
YADKFSIDAAVGAGDKAGLGAGDDYWGGIAAHYKLGPLQLDAAYEGNRNI
EAEGQTWENNTYLVGVQGWFENGISFFAQYKYMEADASNGVNEKQDAMSA
GLMYTTGDWQYKLGYAANFDLERDGKTLSNTSDDVVSAQIMYFVDPSAVL
YARARMNDFNEGLDGLDDAARWTSGTNGDYNEYSVGVEYYF
3D structure
PDB5mdo Structural basis for chitin acquisition by marine Vibrio species.
ChainB
Resolution1.95 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 C8E B F229 N231 I233 F220 N222 I224
BS02 C8E B F278 N289 S291 D292 D317 F269 N280 S282 D283 D308
Gene Ontology
Molecular Function
GO:0015288 porin activity
GO:0046872 metal ion binding
Biological Process
GO:0006811 monoatomic ion transport
GO:0034220 monoatomic ion transmembrane transport
Cellular Component
GO:0009279 cell outer membrane
GO:0016020 membrane
GO:0046930 pore complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5mdo, PDBe:5mdo, PDBj:5mdo
PDBsum5mdo
PubMed29335469
UniProtL0RVU0

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