Structure of PDB 5m8y Chain B

Receptor sequence

>5m8yB (length=419) Species: 1150621 (Sulfurospirillum multivorans DSM 12446) [Search protein sequence]

AAEIRQQFAMTAGSPIIVNDKLERYAEVRTAFTHPTSFFKPNYKGEVKPW
FLSAYDEKVRQIENGENGPKMKAKNVGEARAGRALEAAGWTLDINYGNIY
PNRFFMLWSGETMTNTQLWAPVGLDRRPPDTTDPVELTNYVKFAARMAGA
DLVGVARLNRNWVYSEAVTIPADVPYEQSLHKEIEKPIVFKDVPLPIETD
DELIIPNTCENVIVAGIAMNREMMQTAPNSMACATTAFCYSRMCMFDMWL
CQFIRYMGYYAIPSCNGVGQSVAFAVEAGLGQASRMGACITPEFGPNVRL
TKVFTNMPLVPDKPIDFGVTEFCETCKKCARECPSKAITEGPRTFEGRSI
HNQSGKLQWQNDYNKCLGYWPESGGYCGVCVAVCPFTKNITEVWDGKINT
YGLDADHFRDTVSFRKDRV

3D structure

PDB

5m8y Cobamide-mediated enzymatic reductive dehalogenation via long-range electron transfer.

Chain

Resolution

1.857 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	SF4	B	R291 M292 I296 F328 C329 C332 K333 K334 C335 C390 P391 F392	R285 M286 I290 F322 C323 C326 K327 K328 C329 C384 P385 F386
BS02	SF4	B	C339 P340 S341 I344 C372 C383 G384 C386	C333 P334 S335 I338 C366 C377 G378 C380
BS03	BVQ	B	Y31 T36 A37 F38 Y170 Y246 M249 N272 Q276 S277 V278 A289 M292 G293 A294 C295 V304 R305 L306 H357 N358 Q359 K362 Q364 Y369 C372 W376 Y382	Y25 T30 A31 F32 Y164 Y240 M243 N266 Q270 S271 V272 A283 M286 G287 A288 C289 V298 R299 L300 H351 N352 Q353 K356 Q358 Y363 C366 W370 Y376
BS04	3CH	B	F38 W56 W96 Y102 Y246 W376 Y382	F32 W50 W90 Y96 Y240 W370 Y376

External links

PDB	RCSB:5m8y, PDBe:5m8y, PDBj:5m8y
PDBsum	5m8y
PubMed	28671181

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