Structure of PDB 5m7p Chain B

Receptor sequence
>5m7pB (length=437) Species: 641140 (Brucella abortus str. 2308 A) [Search protein sequence]
MAADILVVDDEVDIRDLVAGILSDEGHETRTAFDADSALAAINDRAPRLV
FLDIWLDGLALLDEIKKQHPELPVVMISGHGNIETAVSAIRRGAYDFIEK
PFKADRLILVAERALETSKLKREVSDLRKRTGDQLELVGTSLAMNQLRQT
IERVAPTNSRIMITGPSGAGKELVARAIHAQSSRANGPFVTVNAATITPE
RMEIELFGTEMERKVGALEEAHGGILYLDEVADMPRETQNKILRVLVDQQ
FERVGGTKRVKVDVRIISSTAQNLEGMIAEGTFREDLFHRLSVVPVQVPA
LAARREDIPSLVEFFMKQIAEQAGIKPRKIGPDAMAVLQAHSWPGNLRQL
RNNVERLMILTRGDDPDELVTADLLPAEITESDQHIMALPLREARERFEK
EYLIAQINRFGGNISRTAEFVGMERSALHRKLKSLGV
3D structure
PDB5m7p Three-Dimensional Structure of Full-Length NtrX, an Unusual Member of the NtrC Family of Response Regulators.
ChainB
Resolution2.36 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 MG B D9 E11 D53 D9 E11 D53
BS02 ADP B L142 V143 G173 G175 K176 E177 L178 L355 R356 L137 V138 G168 G170 K171 E172 L173 L347 R348 MOAD: Kd=70uM
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Sun Dec 1 11:44:21 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)
   1444         else:
=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)
   1446     
   1447     uniprot_line=''
pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '5m7p', asym_id = 'B', title = 'Three-Dimensional Structure of Full-Length NtrX,...Member of the NtrC Family of Response Regulators.'
 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='5m7p', asym_id='B', title='Three-Dimensional Structure of Full-Length NtrX,...Member of the NtrC Family of Response Regulators.')
    839 
    840     if go:
=>  841         display_go(go,uniprot,pdbid,asym_id)
    842     return pubmed,uniprot
    843 
global display_go = <function display_go>, go = '0000160,0005524,0006355,0008134,0016887,0043565', uniprot = '', pdbid = '5m7p', asym_id = 'B'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0000160,0005524,0006355,0008134,0016887,0043565', uniprot='', pdbid='5m7p', asym_id='B')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>