Structure of PDB 5m5v Chain B

Receptor sequence
>5m5vB (length=360) Species: 9913 (Bos taurus) [Search protein sequence]
ILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVII
DMNDPSNPIRRPISADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHT
MTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQI
INYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQ
FKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFP
PEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETI
FVTAPHEATAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAV
RNNLAGAEEL
3D structure
PDB5m5v Cellular and viral peptides bind multiple sites on the N-terminal domain of clathrin.
ChainB
Resolution1.96 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide B R64 P65 I66 S67 L82 K83 Q89 F91 K96 R61 P62 I63 S64 L79 K80 Q86 F88 K93
BS02 peptide B F9 N296 R297 S299 F6 N293 R294 S296
BS03 peptide B L183 Q192 L180 Q189
Gene Ontology
Molecular Function
GO:0005198 structural molecule activity
Biological Process
GO:0006886 intracellular protein transport
GO:0016192 vesicle-mediated transport
Cellular Component
GO:0030130 clathrin coat of trans-Golgi network vesicle
GO:0030132 clathrin coat of coated pit

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5m5v, PDBe:5m5v, PDBj:5m5v
PDBsum5m5v
PubMed27813245
UniProtP49951|CLH1_BOVIN Clathrin heavy chain 1 (Gene Name=CLTC)

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