Structure of PDB 5lmf Chain B

Receptor sequence
>5lmfB (length=318) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence]
GGKKFILELIETVYEEILDLEANLRNGQQTDSTAMWEALHIDDSSYDVNP
FISMLSFDKGIKIMPRIFNFLDKQQKLKILQKIFNELSHLQIIILSSYKT
TPKPTLTQLKKVDLFQMIILKIIVSFLNFIEIMGLLLQLIRNNNVSFLTT
SKIGLNLITILISRAALIKQDSSRSNISPEISTWNEIYDKLFTSLESKIQ
LIFPPREYNDHIMRLQNDKFMDEAYIWAFLASLAASGKLNHQRIIIDEVR
DEIFATINEAETLQKKEKELSVLPQRSQELDTELKSIIYNKEKLYQDLNL
FLNVMGLVYRDGEISELK
3D structure
PDB5lmf A unique surface on Pat1 C-terminal domain directly interacts with Dcp2 decapping enzyme and Xrn1 5'-3' mRNA exonuclease in yeast.
ChainB
Resolution2.15 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide B L717 Q720 R721 I724 R728 F732 M783 I792 E794 L239 Q242 R243 I246 R250 F254 M305 I314 E316
Gene Ontology
Biological Process
GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA

View graph for
Biological Process
External links
PDB RCSB:5lmf, PDBe:5lmf, PDBj:5lmf
PDBsum5lmf
PubMed29078363
UniProtP25644|PAT1_YEAST Deadenylation-dependent mRNA-decapping factor PAT1 (Gene Name=PAT1)

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