Structure of PDB 5lm5 Chain B

Receptor sequence
>5lm5B (length=315) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence]
NLNKSGGKKFILELIETVYEEILDLEANLRNGQQTDSTAMWEALHIDDSS
YDVNPFISMLSFDKGIKIMPRIFNFLDKQQKLKILQKIFNELSHLQIIIL
SSYKTTPKPTLTQLKKVDLFQMIILKIIVSFLSNFIEIMGLLLQLIRNNN
VSFLTTSKIGLNLITILISRAALIKQDISTWNEIYDKLFTSLESKIQLIF
PPREYNDHIMRLQNDKFMDEAYIWAFLASLAASGKLNHQRIIIDEVRDEI
FATINEAETLQKKEKELSVLPQRSQELDTELKSIIYNKEKLYQDLNLFLN
VMGLVYRDGEISELK
3D structure
PDB5lm5 A unique surface on Pat1 C-terminal domain directly interacts with Dcp2 decapping enzyme and Xrn1 5'-3' mRNA exonuclease in yeast.
ChainB
Resolution2.6 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide B L717 Q720 R721 R728 F732 M783 G784 L785 I792 E794 L236 Q239 R240 R247 F251 M302 G303 L304 I311 E313
Gene Ontology
Biological Process
GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA

View graph for
Biological Process
External links
PDB RCSB:5lm5, PDBe:5lm5, PDBj:5lm5
PDBsum5lm5
PubMed29078363
UniProtP25644|PAT1_YEAST Deadenylation-dependent mRNA-decapping factor PAT1 (Gene Name=PAT1)

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