Structure of PDB 5l9l Chain B

Receptor sequence

>5l9lB (length=322) Species: 1183423 (Agrobacterium tumefaciens str. B6) [Search protein sequence]

MDVVIASSGGGWQEAQDKALWAPAAKALNITYTQDTFQNWAEARAQVESG
SVTWDIIQIGIADEPQAKAAGVLEKLDPDIVNKADFPPGSVTDSFVANSN
YSTLIAWNKKTYGDNGPKSMADFFDVKKFPGKRALWNQPIGMIEAAALAL
GTPRDKVYEFLSTEEGRKAAIAKLTELAPSVSVWWESGAQAAQLIKDGEV
DMIITWGGRVQGAINDGANFAYTFNDAQLGTDGYAIVKGAPHRDAAMRFL
KEMSKAEYQKDLPNSFATAPANMKAYDLAKYTPEKMATMASAPENVAVQY
SVDPNFWAKHAKWASEAYDNVR

3D structure

PDB

5l9l Structural Basis for High Specificity of Amadori Compound and Mannopine Opine Binding in Bacterial Pathogens.

Chain

Resolution

1.8 Å

3D
structure

[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	GOP	B	S37 W41 F66 Q67 Q87 Y130 W235 R238 D261 T297	S8 W12 F37 Q38 Q58 Y101 W206 R209 D232 T268	MOAD: Kd=79.4nM
BS02	CA	B	G39 G40 A218 R238	G10 G11 A189 R209
BS03	CA	B	A218 Q222	A189 Q193

External links

PDB	RCSB:5l9l, PDBe:5l9l, PDBj:5l9l
PDBsum	5l9l
PubMed	27609514

[Back to BioLiP]