Structure of PDB 5l7v Chain B

Receptor sequence
>5l7vB (length=562) Species: 435590 (Phocaeicola vulgatus ATCC 8482) [Search protein sequence]
TSEYYQEAANPIATNPALWAKVTAPQISWGSTDIRYKKEEPAPIHSAQKS
MNLTAWKGEKISAQLVVWTPKVLNDLTFMVSDLTSGSATISKENIRTGFV
RYVITDELNKDGLGACGYRNSADFDSTLVADVIDHITPTLTLPANSTQGG
WISVNIPQGTKAGKYTGTVTVKADGITLSELKLNLQVKNRTLPPPSEWAF
HLDLWQNPYAVSRYYNVEPFSKKHFDLMRPLMKLYADAGGKVITASIMHK
PWNGQTYDAFESMVTWLKKADGTWYFDYTVFDKWVEFMMDLGVKKQISCY
SMVPWRLSFQYFDQASNSFKFLDAKPGEVAYEEFWMNMLQDFSKHLKAKG
WFDITHIAMDERPMKDMQETLKVIRKADKDFKVSLAGTYHKELLDDLNDY
CITIAEKFTPEEIEARRKAGKVTTYYTCCTEPRPNTFTFSEPAEAEWLAW
HSAKENLDGYLRWALNSWVKNPLQDSRFTAWAAGDTYMIYPGARSSIRLE
RLTEGIQFFEKVRILKEEFEEKGNKGAIKNIDKTLKMFDESSMDKISPTT
AVNKAKKVINRY
3D structure
PDB5l7v Structural and mechanistic insights into a Bacteroides vulgatus retaining N-acetyl-beta-galactosaminidase that uses neighbouring group participation.
ChainB
Resolution2.3 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 GNL B Q256 W306 D361 E362 Y427 C429 C430 W464 D486 Q255 W305 D360 E361 Y426 C428 C429 W463 D485 MOAD: Kd=9.6nM
External links