Structure of PDB 5kyu Chain B

Receptor sequence
>5kyuB (length=764) Species: 9606 (Homo sapiens) [Search protein sequence]
SPIQVIENDRASRGGQVYATNTRGQIPPLVTTDCMIQDQGNASPRFIRCT
TYCFPCTSDMAKQAQIPLAAVIKPFATIPSNESPLYLVNHGESGPVRCNR
CKAYMCPFMQFIEGGRRYQCGFCNCVNDVPPFYFQHLDHIGRRLDHYEKP
ELSLGSYEYVATLDYCRKSKPPNPPAFIFMIDVSYSNIKNGLVKLICEEL
KTMLEKIPKEEQEETSAIRVGFITYNKVLHFFNVKSNLAQPQMMVVTDVG
EVFVPLLDGFLVNYQESQSVIHNLLDQIPDMFADSNENETVFAPVIQAGM
EALKAADCPGKLFIFHSSLPTAEAPGKLKNRDDKKLVNTDKEKILFQPQT
NVYDSLAKDCVAHGCSVTLFLFPSQYVDVASLGLVPQLTGGTLYKYNNFQ
MHLDRQQFLNDLRNDIEKKIGFDAIMRVRTSTGFRATDFFGGILMNNTTD
VEMAAIDCDKAVTVEFKHDDKLSEDSGALIQCAVLYTTISGQRRLRIHNL
GLNCSSQLADLYKSCETDALINFFAKSAFKAVLHQPLKVIREILVNQTAH
MLACYRKNCASPSAASQLILPDSMKVLPVYMNCLLKNCVLLSRPEISTDE
RAYQRQLVMTMGVADSQLFFYPQLLPIHTLDVKSTMLPAAVRCSESRLSE
EGIFLLANGLHMFLWLGVSSPPELIQGIFNVPSFAHINTDMTLLPEVGNP
YSQQLRMIMGIIQQKRPYSMKLTIVKQREQPEMVFRQFLVEDKGGSSYVD
FLCCVHKEICQLLN
3D structure
PDB5kyu TANGO1/cTAGE5 receptor as a polyvalent template for assembly of large COPII coats.
ChainB
Resolution3.512 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ZN B C364 C367 C386 C389 C98 C101 C120 C123
Gene Ontology
Molecular Function
GO:0008270 zinc ion binding
Biological Process
GO:0006886 intracellular protein transport
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport
Cellular Component
GO:0030127 COPII vesicle coat

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5kyu, PDBe:5kyu, PDBj:5kyu
PDBsum5kyu
PubMed27551091
UniProtO94855|SC24D_HUMAN Protein transport protein Sec24D (Gene Name=SEC24D)

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