Structure of PDB 5kxd Chain B

Receptor sequence
>5kxdB (length=238) Species: 3922 (Wisteria floribunda) [Search protein sequence]
KETTSFVFTRFSPDPQNLLLQGDTVVTSSGHLQLTQVKDGEPVYSSLGRA
LYYAPIHIWDSNTDTVANFVTSFSFVIDAPNKAKAADGLAFFLAPVDTEP
QKPGGLLGLFHDDRHNKSNHIVAVEFDTFKNSWDPEGTHIGINVNSIVSR
KTISWDLENNEVANVVISYQASTKTLTASLVYPSSSTSYILNDVVDLKQI
LPEYVRVGFTAASGLSKDHVETHDVLAWTFDSDLPDPS
3D structure
PDB5kxd Molecular Basis for Recognition of the Cancer Glycobiomarker, LacdiNAc (GalNAc[ beta 14]GlcNAc), by Wisteria floribunda Agglutinin.
ChainB
Resolution1.95 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CA B D157 F159 N161 D164 D127 F129 N131 D134
BS02 MN B E155 D157 D164 H169 E125 D127 D134 H139
BS03 6Y2 B D117 G135 F159 N161 G244 L245 S246 H249 D87 G105 F129 N131 G214 L215 S216 H219
Gene Ontology
Molecular Function
GO:0030246 carbohydrate binding
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:5kxd, PDBe:5kxd, PDBj:5kxd
PDBsum5kxd
PubMed27601469
UniProtA0A1D5B396

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