Structure of PDB 5ksa Chain B

Receptor sequence
>5ksaB (length=190) Species: 4565,9606 [Search protein sequence]
DSPEDFVYQFKGMCYFTNGTERVRLVTRYIYNREEYARFDSDVGVYRAVT
PLGPPAAEYWNSQKEVLERTRAELDTVCRHNYQLELRTTLQRRVEPTVTI
SPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLIRNG
DWTFQILVMLEMTPQRGDVYTCHVEHPSLQNPIIVEWRAQ
3D structure
PDB5ksa Diverse T Cell Receptor Gene Usage in HLA-DQ8-Associated Celiac Disease Converges into a Consensus Binding Solution.
ChainB
Resolution2.0 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide B F11 Y30 Y37 A57 Y60 W61 V67 R70 E74 T77 V78 H81 N82 L85 F10 Y29 Y36 A56 Y59 W60 V66 R69 E73 T76 V77 H80 N81 L84
Gene Ontology
Biological Process
GO:0006955 immune response
GO:0019882 antigen processing and presentation
Cellular Component
GO:0016020 membrane
GO:0042613 MHC class II protein complex

View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:5ksa, PDBe:5ksa, PDBj:5ksa
PDBsum5ksa
PubMed27568928
UniProtA0A0U5Q247;
P08079

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