Structure of PDB 5krr Chain B

Receptor sequence
>5krrB (length=393) Species: 216895 (Vibrio vulnificus CMCP6) [Search protein sequence]
GMQKLTILGATGSIGASTLKVIEQNPDKFSVVALAADSNVEKMQQLCQRW
QPEYAVMANKEAALRLKMALAVLAPNTQVLGGQEALCYVATLEQVDSVMA
AIVGAAGLVPTMAAVKAGKRILLANKEALVMSGQLFIDEVEKSGAQLLPV
DSEHNAIFQCLPQTVQGNLGRCDLASQGVSHILLTGSGGPFRYTDVAELE
AVTPEQAIASMGPKISVDSATMMNKGLEYIEAKWLFNASRDQLKVIIHPQ
SVIHSMVQYLDGSVLAQMGEPDMATPIALTLSYPERVKAGVKPLDFTQVG
ELTFLQPDFERYPCLALAIEACYLGQHATTTLNAANEVAVAAFLARQIKF
TDIARVNDSVLNQVCKQLDSLESLLELDRMARTLADEVVRERA
3D structure
PDB5krr Structural characterization of 1-deoxy-D-xylulose 5-phosphate Reductoisomerase from Vibrio vulnificus.
ChainB
Resolution2.5 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 1.1.1.267: 1-deoxy-D-xylulose-5-phosphate reductoisomerase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 MN B D150 E152 E231 D151 E153 E228
Gene Ontology
Molecular Function
GO:0016491 oxidoreductase activity
GO:0030145 manganese ion binding
GO:0030604 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
GO:0046872 metal ion binding
GO:0070402 NADPH binding
Biological Process
GO:0008299 isoprenoid biosynthetic process
GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
GO:0051484 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:5krr, PDBe:5krr, PDBj:5krr
PDBsum5krr
PubMed30278288
UniProtQ8DBF5|DXR_VIBVU 1-deoxy-D-xylulose 5-phosphate reductoisomerase (Gene Name=dxr)

[Back to BioLiP]