Structure of PDB 5k87 Chain B

Receptor sequence
>5k87B (length=387) Species: 211586 (Shewanella oneidensis MR-1) [Search protein sequence]
LFPPQIKVAATYMRGGTSKGVFFRLQDLPEAAQVPGPARDALLLRVIGSP
DPYAKQIDGMGGATSSTSETVILSHSSKANHDVDYLFGQVSIDKPFVDWS
GNCGNLTAAVGAFAISNGLIDAARIPRNGVCTVRIWQANIGKTIIAHVPI
TDGAVQETGDFELDGVTFPAAEVQIEFMNPAADCMFPTGNLVDVLEVPGI
GRFNATMINAGIPTIFINAEDLGYTGTELQDDINSDNAALAKFETIRAHG
ALRMGLIKHIDEAASRQHTPKIAFVAPPKSYASSSGKTVAAEDVDLLVRA
LSMGKLHHAMMGTAAVAIGTAAAIPGTLVNLAAGGGEKEAVRFGHPSGTL
RVGAQAVQENGEWTVIKAIMSRSARVLMEGFVRVPKP
3D structure
PDB5k87 The PrpF protein of Shewanella oneidensis MR-1 catalyzes the isomerization of 2-methyl-cis-aconitate during the catabolism of propionate via the AcnD-dependent 2-methylcitric acid cycle.
ChainB
Resolution1.219 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 5.3.3.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 MLI B T68 S69 S70 H317 H318 T64 S65 S66 H307 H308
BS02 MLI B S22 E73 C107 G108 N109 H317 M321 G322 T323 S18 E69 C103 G104 N105 H307 M311 G312 T313
Gene Ontology
Molecular Function
GO:0016853 isomerase activity
GO:0016863 intramolecular oxidoreductase activity, transposing C=C bonds
Biological Process
GO:0019629 propionate catabolic process, 2-methylcitrate cycle

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Molecular Function
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Biological Process
External links
PDB RCSB:5k87, PDBe:5k87, PDBj:5k87
PDBsum5k87
PubMed29145506
UniProtQ8EJW4|PRPF_SHEON 2-methyl-aconitate isomerase (Gene Name=prpF)

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