Structure of PDB 5k1r Chain B

Receptor sequence
>5k1rB (length=440) Species: 272560 (Burkholderia pseudomallei K96243) [Search protein sequence]
LYPYAAEFGALHEFPERGMPRERLLEELRSMAVREDRKWESGRCSGTMYC
GDHEHYAFLNEAYGLFSHVNALQRDLCPSMNRMESEIVAMTVALLHGEAV
QRHDGAHRACGALSLGGTESILNATLAYREKARAERGIERPRMIWPASAH
PAFRKAAHLFGFDVTVAPIDPVTMQVDADFVRDAVDANTVMLVGSACNYP
YGTIDPIGALSAIAVEKDVWLHVDGCLGGWMLPWGEALGYPDIPAFDFRL
PGVTSISADTHKFGYGPKGGSVLAWRDASFRRHQYFLMTDWVGGVYGSPG
LTGSRSGGLIAATWAALRSLGREGYLARAKAIFETAFDMQAAVRAIPELR
VLGKPTFCFAFTSDAFDIYHVNDFMRQRGWRFNGLQHPDALHMCVTGPQT
QPGVAERFRQDLGEAVEHARHDARARAFFTQVLDLFTDCP
3D structure
PDB5k1r Characterization of homologous sphingosine-1-phosphate lyase isoforms in the bacterial pathogen Burkholderia pseudomallei.
ChainB
Resolution2.104 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 PLP B G126 T127 H159 D233 C235 K271 G117 T118 H150 D224 C226 K262
Gene Ontology
Molecular Function
GO:0008117 sphinganine-1-phosphate aldolase activity
GO:0016829 lyase activity
GO:0016830 carbon-carbon lyase activity
GO:0016831 carboxy-lyase activity
GO:0030170 pyridoxal phosphate binding
Biological Process
GO:0019752 carboxylic acid metabolic process
GO:0030149 sphingolipid catabolic process

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Molecular Function
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Biological Process
External links
PDB RCSB:5k1r, PDBe:5k1r, PDBj:5k1r
PDBsum5k1r
PubMed27784725
UniProtQ63IP8

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