Structure of PDB 5jsp Chain B

Receptor sequence
>5jspB (length=190) Species: 644107 (Ruegeria lacuscaerulensis ITI-1157) [Search protein sequence]
MTLENVLEAARHLHQTLPALSEFGNWPTDLTATGLQPRAIPATPLVQALD
QPGSPRTTGLVQAIRSAAHLAHWKRTYTEAEVGADFRNRYGYFELFGPTG
HFHSTQLRGYVAYWGAGLDYDWHSHQAEELYLTLAGGAVFKVDGERAFVG
AEGTRLHASWQSHAMSTGDQPILTFVLWRGEGLNALPRMD
3D structure
PDB5jsp New Mechanistic Insight from Substrate- and Product-Bound Structures of the Metal-Dependent Dimethylsulfoniopropionate Lyase DddQ.
ChainB
Resolution2.2 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 4.4.1.3: dimethylpropiothetin dethiomethylase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 FE B H123 H125 E129 Y131 H163 H123 H125 E129 Y131 H163
BS02 DQY B Y92 Y110 Y120 H123 H125 E129 Y131 Y92 Y110 Y120 H123 H125 E129 Y131
Gene Ontology
Molecular Function
GO:0016829 lyase activity
GO:0046872 metal ion binding
GO:0047869 dimethylpropiothetin dethiomethylase activity

View graph for
Molecular Function
External links
PDB RCSB:5jsp, PDBe:5jsp, PDBj:5jsp
PDBsum5jsp
PubMed27755868
UniProtD0CY60|DDDQ_RUELI Dimethylsulfonioproprionate lyase DddQ (Gene Name=dddQ)

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