Structure of PDB 5jso Chain B

Receptor sequence
>5jsoB (length=190) Species: 644107 (Ruegeria lacuscaerulensis ITI-1157) [Search protein sequence]
MTLENVLEAARHLHQTLPALSEFGNWPTDLTATGLQPRAIPATPLVQALD
QPGSPRTTGLVQAIRSAAHLAHWKRTYTEAEVGADFRNRYGYFELFGPTG
HFHSTQLRGYVAYWGAGLDYDWHSHQAEELYLTLAGGAVFKVDGERAFVG
AEGTRLHASWQSHAMSTGDQPILTFVLWRGEGLNALPRMD
3D structure
PDB5jso New Mechanistic Insight from Substrate- and Product-Bound Structures of the Metal-Dependent Dimethylsulfoniopropionate Lyase DddQ.
ChainB
Resolution2.0 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 4.4.1.3: dimethylpropiothetin dethiomethylase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 FE B H123 H125 E129 H163 H123 H125 E129 H163
Gene Ontology
Molecular Function
GO:0016829 lyase activity
GO:0046872 metal ion binding
GO:0047869 dimethylpropiothetin dethiomethylase activity

View graph for
Molecular Function
External links
PDB RCSB:5jso, PDBe:5jso, PDBj:5jso
PDBsum5jso
PubMed27755868
UniProtD0CY60|DDDQ_RUELI Dimethylsulfonioproprionate lyase DddQ (Gene Name=dddQ)

[Back to BioLiP]