Structure of PDB 5jsd Chain B

Receptor sequence
>5jsdB (length=548) Species: 38018 (Bacteriophage sp.) [Search protein sequence]
QTQYYLKYFNPEIVYPKNARIMLDNGDIVRSTVVNNTSNPNVDMTGWVKV
SSVSQIFDETYNITQSVINGNLITVDNFGAKGDGVTDDSAAFQAYCDSAL
TGQNLYLGAKGRYILKNQVDLKGKGLVGNGCGKVSEFYYNLGCIDVDGSS
PDLQGKTAFINCGPTIQNLTARCSNGAGKQVSFIEIDGYLANIDHITLIN
FYNQIVVKQALVGFNFTNAWLYYSQNAGIYCEDPLNRVSTTGTFHNIYFQ
LGDGHAMIFDRDVHGCDFDNIIFESMNGGIKARTVAHCGFGKFWCENLKT
ATSKDWLEVTGANSCYGNSFTGYVKLLGGWTSKTSPTLDSLPTNNYGGVS
VSAEGISIVNAGNKAKMLMLPSGFKTGNATIDETHISSSTVTPLVKRRVI
GADSSGAQYLASDTYTKLSRKWGTYNHGSNNAGAFYAPMMLTYDQSFSTP
QNNNGWKIVKESTGVYRVERVSGNTSVITNGHIVVGSPLMGSRLGTGTGA
THGIQMIETYAGSWTSYTEAAGFKVFWRDSSNALVDPHRFTVAFTATS
3D structure
PDB5jsd Structural basis for fragmenting the exopolysaccharide of Acinetobacter baumannii by bacteriophage Phi AB6 tailspike protein
ChainB
Resolution1.48 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 GAL B E313 N314 E296 N297
BS02 1GN B R254 V255 R237 V238
BS03 BGC B D204 Q226 R254 D187 Q209 R237
BS04 1GN B S331 Y333 S314 Y316
BS05 BGC B N330 Y333 N313 Y316
BS06 6PZ B H304 N377 A378 H287 N360 A361
Gene Ontology
Biological Process
GO:0046718 symbiont entry into host cell
GO:0098994 symbiont entry into host cell via disruption of host cell envelope
GO:0098996 symbiont entry into host cell via disruption of host cell glycocalyx
Cellular Component
GO:0098015 virus tail

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Biological Process
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Cellular Component
External links
PDB RCSB:5jsd, PDBe:5jsd, PDBj:5jsd
PDBsum5jsd
PubMed28209973
UniProtA0A159BDB5

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