Structure of PDB 5jrk Chain B

Receptor sequence
>5jrkB (length=677) Species: 317655 (Sphingopyxis alaskensis RB2256) [Search protein sequence]
SKGRPWTLEDILTVPEVNEIALSDNGRLAIYAAEIADLDAGKPRSHIRIV
DVETGRTKELLTVDTIKSLRSVPGTQDWSALVDLGEGQQLYRIDTEGKLL
PLIVNPNPVPVGKADMSFPLGGGIRPSHIGILDYDWSPDGKWLWYSQLRA
KSDGPRVRFDEEVTALLGRRRSTIDVEVDFFLRNPEGDTTRIMARPSTDR
VATRGGGRVLWRGNEVQFRIEFVAWNRVNRTVRTLAKSILVGPRGGQLST
SGLGSDRELIETSAEGRPHSYGRVAFDIGDSRSAGWKRSRDGKRVVIGTR
GLGDARYGLALIDKTGVRELRADASLTRCGFDGMLRSAICVEEGMSRPPR
LVRVDLGTDKITDLGPISPRHEEIEPLQTIARTFVSRDGYWSSGYVLLPR
GHRAADRHPAVVVTHGTDADDRFAEPANQWNYPVQLLAERGYVVLLLNDP
SPGQSKDLMDAMHAWLRGKGPPDPETVQQKLWLTGVHSFEDAVTELAAEG
LIDPARVGIAGYSRGSQMVNVTVTNSKMFRAASSGDGGFLEPAGYATGRS
SYDAVYGGAPLSDNIERWRRFAPSLNADKVCAAVLQQVASASPSQIELFE
ALRAAGVATQISYYPGATAASDETHVFYLTTNRLRAMRENIAWFDYWLLD
KRDADAPFPDHVVKWDRLKKNLPDRCA
3D structure
PDB5jrk Structure and Mechanism of the Sphingopyxin I Lasso Peptide Isopeptidase.
ChainB
Resolution3.0 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 BGC B D369 E388 I407 D409 D323 E342 I361 D363
Gene Ontology
Molecular Function
GO:0008236 serine-type peptidase activity
Biological Process
GO:0006508 proteolysis

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Molecular Function
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Biological Process
External links
PDB RCSB:5jrk, PDBe:5jrk, PDBj:5jrk
PDBsum5jrk
PubMed27611791
UniProtQ1GQ33

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