Structure of PDB 5jox Chain B

Receptor sequence
>5joxB (length=502) Species: 28116 (Bacteroides ovatus) [Search protein sequence]
QGYSNPVIPGFHPDPSVCKAGDDYYLVNSSFQYFPGVPLFHSKDLVHWEQ
IGNCLTRPSQLDLTNANSGSGIFAPTIRYNDGVFYMITTNVSGKGNFLVH
TTDPRSEWSEPVWLEQGGIDPSLYFEDGKCFMVSNPDGYINLCEIDPMTG
KQLSSSKRIWNGTGGRYAEGPHIYKKDGWYYLLISEGGTELGHKVTIARS
RYIDGPYQGNPANPILTHANESGQSSPIQGTGHADLVEGTDGSWWMVCLA
YRIMPGTHHTLGRETYLAPVRWDKDAWPVVNSNGTISLKMDVPTLPQQEM
KGRPERIDFKEGKLSPEWIHLQNPEAKNYIFTKDGKLRLIATPVTLSDWK
SPTFVALRQEHFDMEASAPVVLQKAGVNDEAGISVFMEFHSHYDLFVRQD
KDRKRSVGLRYKLGEITHYAKEVSLPTDGEVELVVKSDINYYYFGYKVNG
IYHDLGKMNTRYLSTETAGGFTGVVLGLYITSASKDSKAYADFEYFKYKG
KP
3D structure
PDB5jox Structural dissection of a complex Bacteroides ovatus gene locus conferring xyloglucan metabolism in the human gut.
ChainB
Resolution1.8 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.2.1.55: non-reducing end alpha-L-arabinofuranosidase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 EDG B D34 F51 F93 A94 D140 E189 H253 R283 D14 F31 F73 A74 D120 E169 H233 R263 MOAD: Kd=35uM
Gene Ontology
Molecular Function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0016798 hydrolase activity, acting on glycosyl bonds
GO:0046556 alpha-L-arabinofuranosidase activity
Biological Process
GO:0000272 polysaccharide catabolic process
GO:0005975 carbohydrate metabolic process
GO:0085030 symbiotic process benefiting host
GO:2000899 xyloglucan catabolic process
Cellular Component
GO:0042597 periplasmic space

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5jox, PDBe:5jox, PDBj:5jox
PDBsum5jox
PubMed27466444
UniProtA7LXT8|GH43A_BACO1 Non-reducing end alpha-L-arabinofuranosidase BoGH43A (Gene Name=BACOVA_02654)

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