Structure of PDB 5jmv Chain B

Receptor sequence
>5jmvB (length=321) Species: 243232 (Methanocaldococcus jannaschii DSM 2661) [Search protein sequence]
MDPMICLGLEGTAEKTGVGIVTSDGEVLFNKTIMINPREAADHHAETFPK
LIKEAFEVVDKNEIDLIAFSQGPGLGPSLRVTATVARTLSLTLKKPIIGV
NHCIAHIEIGKLTTEAEDPLTLYVSGGNTQVIAYVSKKYRVFGETLDIAV
GNCLDQFARYVNLPHPGGPYIEELARKGKKLVDLPYTVKGMDIAFSGLLT
AAMRAYDAGERLEDICYSLQEYAFSMLTEITERALAHTNKGEVMLVGGVA
ANNRLREMLKAMCEGQNVDFYVPPKEFCGDNGAMIAWLGLLMHKNGRWMS
LDETKIIPNYRTDMVEVNWIK
3D structure
PDB5jmv Structural and functional characterization of KEOPS dimerization by Pcc1 and its role in t6A biosynthesis.
ChainB
Resolution3.38647 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 2.3.1.234: N(6)-L-threonylcarbamoyladenine synthase.
2.7.11.1: non-specific serine/threonine protein kinase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 AMP B K12 S129 G130 G155 D159 G172 P173 G252 V253 D284 K15 S125 G126 G151 D155 G168 P169 G248 V249 D280
BS02 MG B H106 H110 Y127 S129 D284 H102 H106 Y123 S125 D280
Gene Ontology
Biological Process
GO:0002949 tRNA threonylcarbamoyladenosine modification
Cellular Component
GO:0000408 EKC/KEOPS complex

View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:5jmv, PDBe:5jmv, PDBj:5jmv
PDBsum5jmv
PubMed27302132
UniProtQ58530|KAE1B_METJA Probable bifunctional tRNA threonylcarbamoyladenosine biosynthesis protein (Gene Name=MJ1130)

[Back to BioLiP]