Structure of PDB 5ip3 Chain B

Receptor sequence
>5ip3B (length=246) [Search protein sequence]
VKLTKENIVALLTQGKDLEFENLVAFNFKTFCLENLDQIKKMSIISCLTF
LKNRQSIMKVIKQSDFTFGKITIKKTSDRIGATDMTFRRLDSLIRVRLVE
ETGNSENLNTIKSKIASHPLIQAYGLPLDDAKSVRLAIMLGGSLPLIASV
DSFEMISVVLAIYQDAKYKDLGIDPKKYDTKEALGKVCTVLKSKAFEMNE
DQVKKGKEYAAILSSSNPNAKGSVAMEHYSETLNKFYEMFGVKKQA
3D structure
PDB5ip3 Asymmetric Trimeric Ring Structure of the Nucleocapsid Protein of Tospovirus.
ChainB
Resolution3.0 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna B V30 F32 M64 K68 I86 T92 F93 R94 R95 L152 Y184 K192 V24 F26 M58 K62 I80 T86 F87 R88 R89 L146 Y178 K186
BS02 dna B K65 Q69 S229 K59 Q63 S223
Gene Ontology
Cellular Component
GO:0019013 viral nucleocapsid
GO:0019028 viral capsid
GO:1990904 ribonucleoprotein complex

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Molecular Function
View graph for
Cellular Component
External links
PDB RCSB:5ip3, PDBe:5ip3, PDBj:5ip3
PDBsum5ip3
PubMed28768868
UniProtF4ZD19

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