Structure of PDB 5hrg Chain B

Receptor sequence
>5hrgB (length=177) Species: 10497 (African swine fever virus) [Search protein sequence]
GGGMLTLIQGKKIVNHLRSRLAFEYNGQLIKILSKNIVAVGSLRREEKML
NDVNLLIIVPEKKLLKHVLPNIRIKGLSFSVKVCGERKCVLFIEWEKKTY
QLDLFTALAEEKPYAIFHFTGPVSYLIRIRAALKKKNYKLNQYGLFKNQT
LVPLKITTEKELIKELGFTYRIPKKRL
3D structure
PDB5hrg The crystal structure of Se-AsfvPolX(L52/163M mutant) in complex with 1nt-gap DNA1
ChainB
Resolution2.0 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 2.7.7.7: DNA-directed DNA polymerase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna B G82 R84 I124 R127 K131 K136 L137 N138 Q139 Y140 G85 R87 I127 R130 K134 K139 L140 N141 Q142 Y143
BS02 dna B N51 K85 D100 H115 F116 T117 G118 V120 N54 K88 D103 H118 F119 T120 G121 V123
BS03 MN B D49 N51 D100 D52 N54 D103
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003887 DNA-directed DNA polymerase activity
GO:0046872 metal ion binding
Biological Process
GO:0006259 DNA metabolic process
GO:0006281 DNA repair
GO:0006303 double-strand break repair via nonhomologous end joining
GO:0071897 DNA biosynthetic process
Cellular Component
GO:0044423 virion component

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:5hrg, PDBe:5hrg, PDBj:5hrg
PDBsum5hrg
PubMed
UniProtP42494|DPOLX_ASFB7 Repair DNA polymerase X (Gene Name=Ba71V-97)

[Back to BioLiP]