Structure of PDB 5hrf Chain B

Receptor sequence
>5hrfB (length=174) Species: 10497 (African swine fever virus) [Search protein sequence]
GMLTLIQGKKIVNHLRSRLAFEYGQLIKILSKNIVAVGSLRREEKMLNDV
DLLIIVPEKKLLKHVLPNIRIKGLSFSVKVCGERKCVLFIEWEKKTYQLD
LFTALAEEKPYAIFHFTGPVSYLIRIRAALKKKNYKLNQYGLFKNQTLVP
LKITTEKELIKELGFTYRIPKKRL
3D structure
PDB5hrf The crystal structure of Se-AsfvPolX(L52/163M mutant) in complex with 1nt-gap DNA1
ChainB
Resolution2.25 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 2.7.7.7: DNA-directed DNA polymerase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna B V80 C81 G82 R84 K85 R127 K131 K136 L137 Y140 V80 C81 G82 R84 K85 R127 K131 K136 L137 Y140
BS02 MN B D49 D51 D49 D51
BS03 DGT B S39 R42 N48 D49 D51 H115 F116 T117 G118 V120 R127 S39 R42 N48 D49 D51 H115 F116 T117 G118 V120 R127
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003887 DNA-directed DNA polymerase activity
GO:0016779 nucleotidyltransferase activity
GO:0046872 metal ion binding
Biological Process
GO:0006259 DNA metabolic process
GO:0006281 DNA repair
GO:0006303 double-strand break repair via nonhomologous end joining
GO:0071897 DNA biosynthetic process
Cellular Component
GO:0044423 virion component

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5hrf, PDBe:5hrf, PDBj:5hrf
PDBsum5hrf
PubMed
UniProtP42494|DPOLX_ASFB7 Repair DNA polymerase X (Gene Name=Ba71V-97)

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