Structure of PDB 5gzm Chain B

Receptor sequence
>5gzmB (length=346) Species: 38300 (Streptomyces pristinaespiralis) [Search protein sequence]
METWVLGRRDVAEVVAAVGRDELMRRIIDRLTGGLAEIGRGERHLSPLRG
GLERSEPVPGIWEWMPHREPGDHITLKTVGYSPANPARFGLPTILGTVAR
YDDTTGALTALMDGVLLTALRTGAASAVASRLLARPDSHTLGLIGTGAQA
VTQLHALSLVLPLQRALVWDTDPAHRESFARRAAFTGVSVEIAEPARIAA
EADVISTATSVAVGQGPVLPDTGVREHLHINAVGADLVGKTELPLGLLER
AFVTADHPEQALREGECQQLSADRLGPQLAHLCADPAAAAGRQDTLSVFD
STGFAFEDALAMEVFLEAAAERDLGIRVGIEHHPGDALDPYALQPL
3D structure
PDB5gzm Cyclodeaminase_PA
ChainB
Resolution1.8 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 4.3.1.12: ornithine cyclodeaminase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 NAD B Y81 T93 I94 R121 T122 G147 A148 Q149 D170 T171 A208 T209 S210 V211 V233 A235 D236 S301 T302 G303 Y81 T93 I94 R121 T122 G147 A148 Q149 D170 T171 A208 T209 S210 V211 V233 A235 D236 S301 T302 G303
BS02 YCP B R49 K77 R121 A235 R49 K77 R121 A235
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0008473 ornithine cyclodeaminase activity
GO:0016829 lyase activity
Cellular Component
GO:0005737 cytoplasm

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Molecular Function
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Cellular Component
External links
PDB RCSB:5gzm, PDBe:5gzm, PDBj:5gzm
PDBsum5gzm
PubMed
UniProtD9UBW0

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