Structure of PDB 5gzi Chain B

Receptor sequence

>5gziB (length=346) Species: 38300 (Streptomyces pristinaespiralis) [Search protein sequence]

METWVLGRRDVAEVVAAVGRDELMRRIIDRLTGGLAEIGRGERHLSPLRG
GLERSEPVPGIWEWMPHREPGDHITLKTVGYSPANPARFGLPTILGTVAR
YDDTTGALTALMDGVLLTALRTGAASAVASRLLARPDSHTLGLIGTGAQA
VTQLHALSLVLPLQRALVWDTDPAHRESFARRAAFTGVSVEIAEPARIAA
EADVISTATSVAVGQGPVLPDTGVREHLHINAVGADLVGKTELPLGLLER
AFVTADHPEQALREGECQQLSADRLGPQLAHLCADPAAAAGRQDTLSVFD
STGFAFEDALAMEVFLEAAAERDLGIRVGIEHHPGDALDPYALQPL

3D structure

PDB

5gzi Cyclodeaminase_PA

Chain

Resolution

2.17 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

4.3.1.12: ornithine cyclodeaminase.

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	NAD	B	Y81 T93 I94 R121 T122 G147 A148 Q149 D170 T171 T209 S210 V211 V218 V233 A235 D236 S301 T302 G303	Y81 T93 I94 R121 T122 G147 A148 Q149 D170 T171 T209 S210 V211 V218 V233 A235 D236 S301 T302 G303
BS02	YCP	B	R49 E63 K77 R121 A235 T302 G303	R49 E63 K77 R121 A235 T302 G303

Gene Ontology

	Molecular Function
GO:0000166	nucleotide binding
GO:0008473	ornithine cyclodeaminase activity
GO:0016829	lyase activity

	Cellular Component
GO:0005737	cytoplasm

View graph for
Molecular Function

View graph for
Cellular Component

External links

PDB	RCSB:5gzi, PDBe:5gzi, PDBj:5gzi
PDBsum	5gzi
PubMed
UniProt	D9UBW0

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