Structure of PDB 5gtl Chain B

Receptor sequence
>5gtlB (length=491) Species: 1396 (Bacillus cereus) [Search protein sequence]
TNIELKPKVEAFLNEEIKMFINGEFVSAIGGKTFETYNPATEDVLAVVCE
AQEEDIDAAVKAARSAFESGPWAEMTTAERAHLIYKLADLIEEHREELAQ
LEALDNGKPYQVALDDDISATVENYRYYAGWTTKIIGQTIPISKDYLNYT
RHEPVGVVGQIIPWNFPLVMSSWKMGAALATGCTIVLKPAEQTPLSLLYA
AKLFKEAGFPNGVVNFVPGFGPEAGAAIVNHHDIDKVAFTGSTVTGKYIM
RQSAEMIKHVTLELGGKSPNIILEDADLEEAINGAFQGIMYNHGQNCSAG
SRVFVHRKHYETVVDALVKMANNVKLGAGMEKETEMGPLVSKKQQERVLN
YIEQGKKEGATVAAGGERALEKGYFVKPTVFTDVTDDMTIVKEEIFGPVV
VVLPFDSTEEVIERANNSSYGLAAGVWTQNIKTGHQVANKLKAGTVWIND
YNLENAAAPFGGYKQSGIGRELGSYALDNYTEVKSVWVNIK
3D structure
PDB5gtl Crystal structures of aldehyde dehydrogenase from Bacillus cereus having atypical bidirectional oxidizing and reducing activities for all-trans-retinal
ChainB
Resolution2.0 Å
3D
structure
Catalytic site residues are labeled in the structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 NDP B P166 W167 K191 A193 E194 Q195 G224 G228 A229 F242 G244 S245 T248 L267 C300 R350 E397 F399 P163 W164 K188 A190 E191 Q192 G221 G225 A226 F239 G241 S242 T245 L264 C297 R347 E394 F396
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Fri Nov 15 19:34:49 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)
   1444         else:
=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)
   1446     
   1447     uniprot_line=''
pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '5gtl', asym_id = 'B', title = 'Crystal structures of aldehyde dehydrogenase fro...ng and reducing activities for all-trans-retinal '
 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='5gtl', asym_id='B', title='Crystal structures of aldehyde dehydrogenase fro...ng and reducing activities for all-trans-retinal ')
    839 
    840     if go:
=>  841         display_go(go,uniprot,pdbid,asym_id)
    842     return pubmed,uniprot
    843 
global display_go = <function display_go>, go = '0016491,0016620', uniprot = '', pdbid = '5gtl', asym_id = 'B'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0016491,0016620', uniprot='', pdbid='5gtl', asym_id='B')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>