Structure of PDB 5gqf Chain B

Receptor sequence
>5gqfB (length=582) Species: 1679 (Bifidobacterium longum subsp. longum) [Search protein sequence]
GTTYYVSSAHGDDANAGTSENAPWKSLTKVNDIASDLGPGDSVLLEYGSE
FNDQYLHIKDTAGNADAPITISAYGDADEGKPVIASNGVKGSQWEQDYRA
NVGNHKNKGTVSTTLLLKDVSYITVSNLEITNDDADVYDPIDTWKWTDTP
DSDGTKLDRSASRMDRTGVAGIAENGATMSNVTLDNLYIHDVDGNIYNKH
MANGGIYFMAHYPMENTSAETDVWLREHVSRFDHVTIRNSTVKDVDRWGI
AVGYTAYLNYIDANYGDGSIDDALIAKYGSTNVRIENNYVKGAGGDAITL
MYCDRPVIEHNVGDSVSKHINTQDYTQPGSYGGRVAAGIWPWRCKDPVFQ
YNEMYNNLNAEHGNGDGQAWDADYGDGTLYQYNYSYGNSFASLMICNWYA
VNTTFRYNISQNDRQGVFDLPSNGPGNHIYNNTVYVDADSQVLTKRSNSQ
SLFENNIFINATNTKKTETWNRGSQNGGQTYDNNMYVNYANKPTSDANAI
EADDVSAVLAGAGSAPTSALKSGAEHARTGEKAAFDGYRPVAGSKAINAG
KVVSDLNDYAVENDFLGNAVKGRPDLGAVEAA
3D structure
PDB5gqf Molecular Insight into Evolution of Symbiosis between Breast-Fed Infants and a Member of the Human Gut Microbiome Bifidobacterium longum
ChainB
Resolution1.82 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.2.1.140: lacto-N-biosidase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 GAL B H150 K244 H245 W387 H105 K199 H200 W342
BS02 CA B D178 D179 V182 D238 D133 D134 V137 D193
External links