Structure of PDB 5gkr Chain B

Receptor sequence

>5gkrB (length=213) Species: 9606 (Homo sapiens) [Search protein sequence]

QSALTQPRSVSGSPGQSVTISCTGTSSDVGGYNYVSWYQQHPGKAPKVMI
YDVSKRPSGVPDRFSGSKSGNTASLTISGLQAEDEADYYCCSYAGSYTYV
FGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTV
AWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVT
HEGSTVEKTVAPT

3D structure

PDB

5gkr Clonal evolution and antigen recognition of anti-nuclear antibodies in acute systemic lupus erythematosus

Chain

Resolution

2.1 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	dna	B	Y95 Y96	Y97 Y99	PDBbind-CN: Kd=4.61nM

External links

PDB	RCSB:5gkr, PDBe:5gkr, PDBj:5gkr
PDBsum	5gkr
PubMed	29180749

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